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Stanford University Bioinformatics Data Analyst in Stanford, California

Bioinformatics Data Analyst

Stanford, California, United States

Information Analytics

Post Date May 22, 2024

Requisition # 103307

The Stanford Translational Artificial Intelligence (STAI) Lab (PI: Dr. Ehsan Adeli) in the Department of Psychiatry and Behavioral Sciences is seeking a Research Data Analyst 1 to Manage and analyze large amounts of information, typically technical or scientific in nature, under the direction of project researchers, investigators, or managers. The Analyst will be responsible for day-to-day management of information workflow, which include administrating REDCap instances, quality controlling data, and communicating data issues to collaborators. The Analyst will be in charge of working with large scale datasets of MRI, Video, Imaging, and Electronic Health Records used for different research projects applied to Mental Health, Precision Medicine, and Neuroscience (neurodegenerative and neuropsychiatric) use cases. Knowledge and experiences in machine learning and AI algorithms is a plus.

The analyst will need to work within the central computational infrastructure of the lab, which include a common development environment deployed on Linux servers, using web-based issue trackers, documenting procedures and scripts on lab internal wiki pages, creating and deploying unit tests, and submitting scripts to central, version controlled repositories. The ability to handle multiple projects and superior communication skills are central to this role, which include timely and clear responses to inquiries by lab members and collaborators.

Duties include:

· Collect, manage and clean datasets.

· Employ new and existing tools to interpret, analyze, and visualize multivariate relationships in data.

· Create databases and reports, develop algorithms and statistical models, and perform statistical analyses appropriate to data and reporting requirements.

· Use system reports and analyses to identify potentially problematic data, make corrections, and determine root cause for data problems from input errors or inadequate field edits, and suggest possible solutions.

· Develop reports, charts, graphs and tables for use by investigators and for publication and presentation.

· Analyze data processes in documentation.

· Collaborate with faculty and research staff on data collection and analysis methods.

· Provide documentation based on audit and reporting criteria to investigators and research staff.

· Communicate with government officials, grant agencies and industry representatives.

    • Other duties may also be assigned
DESIRED QUALIFICATIONS: · Experience with pipeline management toolchain (e.g. CMAKE, Snakemake, Airflow, Kubernetes) and environment/containerization systems (conda, Docker, Singularity). · Experience in using a HPCC environment is desirable, · Familiarity with shell scripting · Experience with git. · Experience with Python programing. EDUCATION & EXPERIENCE (REQUIRED): Bachelor's degree or a combination of education and relevant experience. A degree in CS or IT is desired. Experience in a quantitative discipline such as economics, finance, statistics or engineering combined with the technical and interpersonal skills required for day-to-day management of information workflow. KNOWLEDGE, SKILLS AND ABILITIES (REQUIRED): · Substantial experience with MS Office and analytical programs. · Experience with data management systems, such as REDCap (using MySQL) or XNAT (using PostgreSQL). · Python programming. · Strong writing and analytical skills. · Experience using the above languages and working within UNIX/Linux Ability to prioritize workload. PHYSICAL REQUIREMENTS*: · Sitting in place at computer for long periods of time with extensive keyboarding/dexterity. · Occasionally use a telephone. · Rarely writing by hand.

    • Consistent with its obligations under the law, the University will provide reasonable accommodation to any employee with a disability who requires accommodation to perform the essential functions of his or her job.

WORKING CONDITIONS:

Some work may be performed in a laboratory or field setting.

WORK STANDARDS:

· Interpersonal Skills: Demonstrates the ability to work well with Stanford colleagues and clients and with external organizations.

· Promote Culture of Safety: Demonstrates commitment to personal responsibility and value for safety; communicates safety concerns; uses and promotes safe behaviors based on training and lessons learned.

· Subject to and expected to comply with all applicable University policies and procedures, including but not limited to the personnel policies and other policies found in the University's Administrative Guide, http://adminguide.stanford.edu.

The expected pay range for this position is $66,560 to $97,000 per annum. Stanford University provides pay ranges representing its good faith estimate of what the university reasonably expects to pay for a position. The pay offered to a selected candidate will be determined based on factors such as (but not limited to) the scope and responsibilities of the position, the qualifications of the selected candidate, departmental budget availability, internal equity, geographic location and external market pay for comparable jobs.

At Stanford University, base pay represents only one aspect of the comprehensive rewards package. The Cardinal at Work website (https://cardinalatwork.stanford.edu/benefits-rewards) provides detailed information on Stanford’s extensive range of benefits and rewards offered to employees. Specifics about the rewards package for this position may be discussed during the hiring process.

Why Stanford is for You

Imagine a world without search engines or social platforms. Consider lives saved through first-ever organ transplants and research to cure illnesses. Stanford University has revolutionized the way we live and enrich the world. Supporting this mission is our diverse and dedicated 17,000 staff. We seek talent driven to impact the future of our legacy. Our culture and unique perks empower you with:

Freedom to grow. We offer career development programs, tuition reimbursement, or audit courses. Join a TedTalk, film screening, or listen to a renowned author or global leader speak.

A caring culture. We provide superb retirement plans, generous time-off, and family care resources.

A healthier you. Climb our rock wall, or choose from hundreds of health or fitness classes at our world-class exercise facilities. We also provide excellent health care benefits.

Discovery and fun. Stroll through historic sculptures, trails, and museums.

Enviable resources. Enjoy free commuter programs, ridesharing incentives, discounts and more.

We believe Stanford’s future success will be shaped by the diverse perspectives, unique experiences, and inclusive culture of its community.

Consistent with its obligations under the law, the University will provide reasonable accommodations to applicants and employees with disabilities. Applicants requiring reasonable accommodation for any part of the application or hiring process should contact Stanford University Human Resources at stanfordelr@stanford.edu.

Stanford is an equal employment opportunity and affirmative action employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, protected veteran status, or any other characteristic protected by law.

Additional Information

  • Schedule: Full-time

  • Job Code: 4751

  • Employee Status: Regular

  • Grade: G

  • Requisition ID: 103307

  • Work Arrangement : Hybrid Eligible

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